Task-oriented toolkits built on top of ChlORIS. This list will grow, eventually,
probably. If you have suggestions, let us know.
graft
Graft your own plastid genome onto the ChlORIS reference for phylogenomic inference, preserving the ChlORIS alignment structure exactly.
ChloroScan
Recover and quality-assess plastid genomes from metagenomic assemblies, using the ChlORIS metagenomic database as its reference.